June 15, 2024

Ancient Genetic Stability Discovered in Lycophytes, Providing Window into Plant Evolution

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Jan 20, 2024

Researchers have uncovered an unusual genetic stability in lycophytes, a group of ancient plants that emerged around 350 million years ago. The findings, published in the Proceedings of the National Academy of Sciences, provide a unique window into plant evolution by examining organisms that have maintained a steady genome for hundreds of millions of years.

Lycophytes Maintain Ancient Genetic Signature

Lycophytes, including clubmosses and quillworts, represent some of the earliest vascular plants on Earth. This group evolved complex reproductive organs and seeds long before flowering plants emerged.

Despite their primal origins, lycophytes have retained a surprisingly conservative genetic makeup. Scientists sequenced the genomes of three lycophyte species and found that their gene content has remained steady since the days of the coal swamps.

While flowering species have experienced rapid genetic changes over the past 150 million years, adapting to shifts in climate and environment, lycophytes have held on to their ancient genetic signatures. This stability is almost unheard of in the plant kingdom.

“We found that lycophytes are evolving very slowly at the genomic level, maintaining ancestral traits over hundreds of millions of years,” said lead researcher Dr. Fay-Wei Li from Boyce Thompson Institute. “Their genomes represent the best living record of what early land plant genomes looked like.”

Insights into Early Plant Evolution

The genetic conservatism displayed by lycophytes provides researchers with a glimpse into what genes were present in ancient plant groups. By comparing the genomes of lycophytes and flowering species, scientists can piece together how plants evolved key adaptations over time.

“Lycophytes retain ancestral genes that have been lost in all other living vascular plant lineages over the past 300 million years of evolution,” said Li. “We can use them as a template to understand how plants colonized land and developed complex reproductive strategies.”

The team found that lycophytes lack many genes involved in environmental stress responses and interaction with microbes. This suggests early land plants did not require complex mechanisms for dealing with changes in their surroundings.

“Our analysis uncovered evolutionary trajectories that led to what flowering plant genomes look like today,” Li added. “We can track how genomic changes enabled plants to better tolerate climatic shifts, pathogens, and herbivores.”

Implications for Plant Breeding

In addition to evolutionary insights, the genetic stability of lycophytes may have practical implications. Breeders could potentially introduce beneficial ancestral genes, preserved in lycophytes, into modern crops.

“The conservation of genes across 300 million years of evolution suggests they encode important functions for plant survival,” said co-author Dr. Gane Ka-Shu Wong from University of Alberta. “We may be able to utilize these genes lost in flowering plants to improve traits that have eroded over time, like resistance to stresses.”

By studying organisms frozen in evolutionary time, scientists have opened an unprecedented window into the history of terrestrial flora. The long-lasting genomic signatures of lycophytes serve as a blueprint of the first inventors of seeds and leaves on Earth.

Background on Lycophytes

Lycophytes are a division of plants that emerged around 350 million years ago during the late Devonian period. They flourished into tree-like forms during the Carboniferous period and contributed to the extensive coal deposits from that era.

Modern lycophytes are descendents of these ancient plants. They include clubmosses, firmosses and quillworts – herbaceous plants found in tropical and temperate regions around the world.

While flowering plants now dominate most ecosystems, lycophytes were among the first plants to develop vascular tissues for transporting water and nutrients. They also pioneered reproductive strategies like spores and seeds.

For hundreds of millions of years, lycophytes grew alongside early ferns and primitive gymnosperms, adapting to the challenges of life on land. But they always maintained a remarkably stable genomic makeup, even as the world transformed around them.

Lycophyte Genomic Study

In the recent study, an international team of researchers, led by Dr. Li, sought to sequence lycophyte genomes to understand why they evolve so slowly.

They pieced together high-quality genome assemblies for three lycophyte species spanning the group: Huperzia selago, Isoetes flaccida, and the world’s tallest land plant Dendrolycopodium obscurum. This represented the first such genomes for lycophytes.

By comparing the genomic data to 72 other land plant genomes, the team uncovered evolutionary trajectories of different gene families across the plant tree of life. They also identified ancestral genes in lycophytes that have been lost in all other plant lineages over time.

“Lycophytes are like these quiet, shy kids that sit in the back of the class but have lots of great stories and knowledge,” said Li. “We show that they retain ancestral traits from the first stages of plant evolution on land.”

Next Steps

The researchers will continue mining the lycophyte genomes they sequenced to identify beneficial genes that could be introduced to modern crops. They also plan to examine why certain genes and pathways were retained in lycophytes but lost in other plants.

More genomic sampling of lycophytes and their extinct relatives may shed light on how early land floras responded to crises like the end-Permian mass extinction.

Ultimately, leveraging genomic studies of “living fossils” promises to unravel key details about the evolutionary journeys that shaped biodiversity over hundreds of millions of years. Lycophytes offer an unprecedented glimpse into deep phylogenic history.

“These plants represent the best living record of early events in vascular plant evolution,” said Li. “We’ve really just scratched the surface of what insights their genomes can provide.”

Key Findings Summary

  • Lycophytes have remained genetically stable for over 300 million years
  • Their genomes represent the most faithful living record of early land plant evolution
  • Lycophytes lack many stress response genes present in flowering plants
  • Ancestral lycophyte genes lost in other plants may be used to improve crops
  • Ongoing lycophyte genome studies will provide evolutionary insights



AiBot scans breaking news and distills multiple news articles into a concise, easy-to-understand summary which reads just like a news story, saving users time while keeping them well-informed.

To err is human, but AI does it too. Whilst factual data is used in the production of these articles, the content is written entirely by AI. Double check any facts you intend to rely on with another source.

By AiBot

AiBot scans breaking news and distills multiple news articles into a concise, easy-to-understand summary which reads just like a news story, saving users time while keeping them well-informed.

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