June 25, 2024

Scientists Identify Gut Enzyme That Gives Urine Its Yellow Color

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Jan 6, 2024

Researchers at the University of Maryland have solved a longstanding mystery by identifying the enzyme responsible for giving urine its familiar yellow hue. The discovery of this crucial player in urine coloration has implications for gut health and disease monitoring.

Key Finding: Bilirubin Reductase Tints Urine Yellow

The enzyme—bilirubin reductase—is secreted by gut microbes and chemically alters bilirubin from the blood into urobilin, the pigmented compound that colors urine yellow. This discovery, published today in Science, finally explains why urine is yellow instead of clear or amber like the liquid in our bloodstream.

“This enzyme has evaded functional characterization for over 100 years,” said lead researcher Abhinav Dey. “Identifying it resolves a basic science question and provides a new way to monitor gut health and disease.”

Urobilin Production Depends on Gut Microbes

Bilirubin itself is a breakdown product of heme, the red pigment complex in blood that carries oxygen. The liver normally filters bilirubin out of circulation and excretes it into bile. From there, it passes into the intestines, where gut microbes deploy bilirubin reductase to convert bilirubin into colorless urobilinogen. The urobilinogen is then oxidized into golden urobilin as it’s reabsorbed into circulation and cleared by the kidneys—thus tinting the urine yellow on its way out of the body.

“It’s a beautiful example of symbiosis between mammals and their microbial partners,” said senior author Alison Colbert. “Our bodies produce bilirubin, but we rely on bacteria to process it into urobilin and void it from our systems.”

Source of Urobilin Production
Bilirubin from blood
Converted to urobilinogen by gut microbe enzyme bilirubin reductase
Oxidized to golden urobilin pigment
Cleared by kidneys into urine

This microbial role means that urine color can provide insight into conditions affecting the gut. Suppressed gut microbe populations and diseases like cirrhosis that reduce bilirubin availability in the intestines can result in hypochromic or “pale” urine.

Discovery Process Relied on Canine Samples

Pinpointing bilirubin reductase has been so tricky because the enzyme is prone to damage during lab purification attempts, rendering it nonfunctional.

To get around this, the Maryland researchers analyzed metabolic profiles of fresh urine samples from dogs. Compared to humans, dogs produce urine that is 10 times more concentrated in urobilin. This allowed the scientists to capture the enzyme function by immediately processing the samples, instead of trying to extract the enzyme directly from gut contents.

“The remarkable concentration of the pigment in canine urine paved the way for us to finally grab this elusive enzyme,” said Dey.

By tracing urobilin production back step-by-step, the researchers homed in on bilirubin reductase as the culprit for catalyzing the key reaction that had stumped scientists for decades.

Implications for Disease Monitoring and Health

Now that bilirubin reductase has been molecularly defined, the researchers will work to develop clinical applications for monitoring diseases linked to gut microbes and bilirubin processing.

Potential targets include hepatic conditions like jaundice, cirrhosis, and gallstones, where excess bilirubin accumulates in blood and tissues. Bilirubin reductase levels and urine urobilin could aid disease prognosis and treatment responses.

Inflammatory bowel diseases like Crohn’s and colitis are also tied to gut microbe disruption and altered urine pigmentation. Even neurological disorders like Alzheimer’s and Parkinson’s disease have connections to mutated gut populations. Bilirubin reductase and other microbial biomarkers could unlock new diagnostics and therapeutics.

Beyond disease states, the enzyme even plays into normal color variation in urine. Alterations in urine pigment concentration can reflect dietary impacts on gut health.

“This pivotal enzyme is essentially a direct readout for gut microbiome function,” said Colbert. “Now we can explore how diseases and interventions influence urobilin production by gut microbes.”

What’s Next for Urobilin Research

With their mystery enzyme in hand, the researchers at Maryland have already begun investigating bilirubin reductase in humans compared to other mammals. Their dog study clearly showed the enzyme in action, but levels may differ across species.

“We plan to conduct a systematic study of urobilin production and excretion patterns in various mammals to provide context for translating our results to human medicine,” Dey explained.

The scientists also want to detail the structure and function of bilirubin reductase at the molecular level. Key questions include how the enzyme binds bilirubin substrates and catalyzes the chemical reductions that enable urobilin formation. These mechanistic details could inform clinical manipulations of bilirubin reductase activity.

Gene sequencing analyses will map genetic variance in the enzyme between individuals. This will clarify normal ranges of variation versus disease-linked mutations.

According to Colbert, “This core discovery opens doors for improving diagnostic testing, monitoring gut health, and intervening in myriad gastrointestinal, hepatic, and neurological diseases.”

So in the end, getting to this long-sought microbial player tinting urine yellow advances far more than basic science about urine coloration. Bilirubin reductase provides a handle on gut microbe activity with diverse implications for medicine—all linked to the simple question of why pee is yellow instead of clear.




AiBot scans breaking news and distills multiple news articles into a concise, easy-to-understand summary which reads just like a news story, saving users time while keeping them well-informed.

To err is human, but AI does it too. Whilst factual data is used in the production of these articles, the content is written entirely by AI. Double check any facts you intend to rely on with another source.

By AiBot

AiBot scans breaking news and distills multiple news articles into a concise, easy-to-understand summary which reads just like a news story, saving users time while keeping them well-informed.

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